Genome-wide Complex Trait Bayesian analysis
GCTB is a C++ software tool that comprises Bayesian mixed linear models for complex trait analyses using genome-wide SNPs.
Use the command below (with the test dataset):
gctb --bfile data/1000G_eur_chr22 --pheno data/test.phen --bayes S --chain-length 1100 --burn-in 100 --out test
An alternative way to run the program with the parameter settings is to use a input parameter file:
gctb --inp-file test.inp