@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Skipping web check... [ --noweb ] 
Writing this text to log file [ scores.log ]
Analysis started: Sun Feb 12 05:38:54 2017

Options in effect:
	--bfile target
	--score Discovery_PLT_1.txt
	--out scores
	--noweb

Reading map (extended format) from [ target.bim ] 
5000 markers to be included from [ target.bim ]
Reading pedigree information from [ target.fam ] 
10000 individuals read from [ target.fam ] 
10000 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
2981 cases, 7019 controls and 0 missing
4988 males, 5012 females, and 0 of unspecified sex
Reading genotype bitfile from [ target.bed ] 
Detected that binary PED file is v1.00 SNP-major mode
Before frequency and genotyping pruning, there are 5000 SNPs
10000 founders and 0 non-founders found
Total genotyping rate in remaining individuals is 1
0 SNPs failed missingness test ( GENO > 1 )
0 SNPs failed frequency test ( MAF < 0 )
After frequency and genotyping pruning, there are 5000 SNPs
After filtering, 2981 cases, 7019 controls and 0 missing
After filtering, 4988 males, 5012 females, and 0 of unspecified sex
Reading set of predictors from [ Discovery_PLT_1.txt ]
Read 5000 predictors; 5000 mapped to SNPs; 5000 to alleles
Writing problem SNPs in predictor to [ scores.nopred ]
Writing profiles to [ scores.profile ]

Analysis finished: Sun Feb 12 05:39:02 2017